DIMACS Workshop on Protein Strucuture and Structural Genomics: Prediction, Determination,
Technology and Algorithms
March 8 - 9, 2001
DIMACS Center, Rutgers University, Piscataway, NJ
- Organizers:
- Sorin Istrail, Celera Genomics, Sorin.Istrail@celera.com
- Ron Levy, Rutgers University, ronlevy@lutece.rutgers.edu
- Mona Singh, Princeton University, mona@cs.princeton.edu
Presented under the auspices of the
Special Year on Computational Molecular Biology.
Program:
Thursday, March 8, 2001
3:00-3:55 Registration
3:55-4:00 Fred Roberts, Opening Remarks
4:00-4:30 Sorin Istrail, Celera Genomics
101 Optimal PDB Structure Alignments:
A Branch-and-Cut Algorithm for the Maximum Contact
Overlap Problem
4:30-5:15 Russell Schwartz, Celera Genomics
Comparative Structural and Functional Genomics Using
Weak Prediction Methods
5:15-6:00 John Moult, CARB
Completeness in Structural Genomics
6:00-8:00 Cocktails & Dinner
8:00-8:45 Gaetano Montelione, Rutgers University
Structural Genomics of Eukaryotic Organisms
8:45-9:30 James Prestegard, University of Georgia
Rapid Determination of Backbone Folds Using NMR and
Residual Dipolar Couplings
9:30-10:00 Ron Levy, Rutgers University
Recent Developments in Protein Fold Recognition
Friday, March 9, 2001
8:00-8:50 Registration
8:50-9:00 Opening Remarks
9:00-9:45 Paul Thomas, Celera Genomics
Predicting Folds and Functions in the Human Proteome.
9:45-10:30 Jeff Skolnick, Danforth Center
Prediction of Protein Structure and Function on a Genomic Scale
10:30-11:00 Coffee
11:00-11:45 Julian Gough, Cambridge University
Structural Assignments to Genomes Using Hidden Markov Models
11:45-12:30 Kevin Karplus, University of California - Santa Cruz
Estimating Statistical Significance for Reverse-sequence Null Models
12:30- 1:30 Lunch
1:30- 2:15 Bonnie Berger, MIT
Mathematical Challenges in Protein Motif Recognition
2:15- 2:45 Mona Singh, Princeton University
Towards Predicting Coiled-Coil Protein Interactions
2:45- 3:15 Coffee
3:15- 4:00 Richard Friesner, Columbia Chemistry
A New Approach to Fold Recognition Combining
Secondary Structure Prediction, Sequence Alignment,
and Tertiary Folding Methods
4:00- 4:45 Ron Elber, Cornell
Algorithms for Protein Recognition by Threading:
Results from Linear Optimization
4:45- 6:00 Wine and Cheese
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Document last modified on October 3, 3000.